If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ), 'gf_id' => 'HOM05D000725', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000725' ), 'data_identifier' => 'HOM05D000725', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000725', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p25850' => 'bna', 'A02p28700' => 'bna', 'A03p43610' => 'bna', 'A04p17710' => 'bna', 'A04p17720' => 'bna', 'A04p25600' => 'bna', 'A07p07970' => 'bna', 'A08p03500' => 'bna', 'A08p12990' => 'bna', 'A08p13090' => 'bna', 'A08p13100' => 'bna', 'A10p04230' => 'bna', 'A10p19550' => 'bna', 'Aa31LG1G14210' => 'aar', 'Aa31LG1G19160' => 'aar', 'Aa31LG4G13300' => 'aar', 'Aa31LG7G15070' => 'aar', 'Aa31LG8G11070' => 'aar', 'Aa31LG8G13750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1727' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.163' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1840' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1852' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1864' => 'aag', 'Actinidia00556' => 'ach', 'Actinidia00658' => 'ach', 'Actinidia02233' => 'ach', 'Actinidia07812' => 'ach', 'Actinidia11756' => 'ach', 'Actinidia11757' => 'ach', 'Actinidia25924' => 'ach', 'Actinidia27876' => 'ach', 'Actinidia27877' => 'ach', 'Actinidia29727' => 'ach', 'Actinidia31487' => 'ach', 'Actinidia33901' => 'ach', 'Actinidia33902' => 'ach', 'Actinidia33903' => 'ach', 'Ah.01g009440' => 'amhyb', 'Ah.01g019080' => 'amhyb', 'Ah.07g200010' => 'amhyb', 'Ah.16g103940' => 'amhyb', 'AL1G15330' => 'aly', 'AL3G39800' => 'aly', 'AL3G52550' => 'aly', 'AL3G52560' => 'aly', 'AL4G10630' => 'aly', 'AL4G16130' => 'aly', 'AL5G20900' => 'aly', 'AL6G31990' => 'aly', 'Aqoxy2G03948' => 'aox', 'Aqoxy3G00805' => 'aox', 'Aqoxy3G02598' => 'aox', 'Aqoxy4G01578' => 'aox', 'Aqoxy4G01932' => 'aox', 'Aqoxy5G01532' => 'aox', 'Aqoxy5G01538' => 'aox', 'Aqoxy7G00421' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3X7AYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89IITC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97JS8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JBJ7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7CALB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF2MUZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFA32V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1J40P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8TDAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TC9Y2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UYCW98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6JAPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRRC6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9Z9L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEQG2X' => 'arhy', 'AT1G05490' => 'ath', 'AT2G16390' => 'ath', 'AT2G21450' => 'ath', 'AT2G21455' => 'ath', 'AT3G24340' => 'ath', 'AT3G31900' => 'ath', 'AT3G32280' => 'ath', 'AT3G32330' => 'ath', 'AT3G42670' => 'ath', 'AT5G20420' => 'ath', 'ATR0037G040' => 'atr', 'ATR0037G070' => 'atr', 'ATR0594G054' => 'atr', 'ATR0594G114' => 'atr', 'ATR0665G425' => 'atr', 'ATR0810G099' => 'atr', 'Atru.chr12.108' => 'acertr', 'Atru.chr5.3086' => 'acertr', 'Atru.chr9.1152' => 'acertr', 'AUR62007195' => 'cqu', 'AUR62007196' => 'cqu', 'AUR62007229' => 'cqu', 'AUR62010106' => 'cqu', 'AUR62011279' => 'cqu', 'AUR62011280' => 'cqu', 'AUR62012311' => 'cqu', 'AUR62013100' => 'cqu', 'AUR62016777' => 'cqu', 'AUR62016778' => 'cqu', 'AUR62018771' => 'cqu', 'AUR62018807' => 'cqu', 'AUR62018808' => 'cqu', 'AUR62022951' => 'cqu', 'BcaB02g06845' => 'bca', 'BcaB02g06846' => 'bca', 'BcaB02g06847' => 'bca', 'BcaB02g06848' => 'bca', 'BcaB02g06849' => 'bca', 'BcaB02g06851' => 'bca', 'BcaB02g06852' => 'bca', 'BcaB02g06853' => 'bca', 'BcaB02g06854' => 'bca', 'BcaB02g06855' => 'bca', 'BcaB03g14589' => 'bca', 'BcaB04g17070' => 'bca', 'BcaB04g20559' => 'bca', 'BcaB04g20560' => 'bca', 'BcaB06g26619' => 'bca', 'BcaB06g27144' => 'bca', 'BcaB06g28665' => 'bca', 'BcaB06g28666' => 'bca', 'BcaB08g34646' => 'bca', 'BcaB08g36500' => 'bca', 'BcaC01g03323' => 'bca', 'BcaC02g07841' => 'bca', 'BcaC04g19431' => 'bca', 'BcaC05g24378' => 'bca', 'BcaC05g24379' => 'bca', 'BcaC05g24380' => 'bca', 'BcaC05g24381' => 'bca', 'BcaC06g35688' => 'bca', 'BcaC06g35847' => 'bca', 'BcaC06g35852' => 'bca', 'BcaC07g38060' => 'bca', 'BolC3t15565H' => 'bol', 'BolC3t17626H' => 'bol', 'BolC3t19408H' => 'bol', 'BolC3t19409H' => 'bol', 'BolC4t27758H' => 'bol', 'BolC5t29162H' => 'bol', 'BolC7t41490H' => 'bol', 'BolC7t41492H' => 'bol', 'BolC7t41494H' => 'bol', 'BolC7t41495H' => 'bol', 'BolC7t41670H' => 'bol', 'BolC7t45169H' => 'bol', 'BolC8t48449H' => 'bol', 'BolC8t48455H' => 'bol', 'BolC8t48460H' => 'bol', 'BolC9t55665H' => 'bol', 'BolC9t58445H' => 'bol', 'BraA03t12293Z' => 'bra', 'BraA03t13498Z' => 'bra', 'BraA04t18064Z' => 'bra', 'BraA07t28584Z' => 'bra', 'BraA08t33283Z' => 'bra', 'BraA10t42690Z' => 'bra', 'BraA10t44031Z' => 'bra', 'C02p60270' => 'bna', 'C03p53660' => 'bna', 'C04p62740' => 'bna', 'C05p03850' => 'bna', 'C07p12020' => 'bna', 'C07p46510' => 'bna', 'C07p46520' => 'bna', 'C09p55760' => 'bna', 'CAN.G1016.5' => 'can', 'CAN.G1445.14' => 'can', 'CAN.G1544.11' => 'can', 'CAN.G186.16' => 'can', 'CAN.G249.5' => 'can', 'CAN.G300.1' => 'can', 'CAN.G362.23' => 'can', 'CAN.G362.24' => 'can', 'CAN.G572.31' => 'can', 'CAN.G572.34' => 'can', 'CAN.G649.4' => 'can', 'CAN.G649.5' => 'can', 'CAN.G830.1' => 'can', 'CAN.G880.7' => 'can', 'CAN.G9.13' => 'can', 'CAN.G916.9' => 'can', 'CANSAT11G1287' => 'cansat', 'CANSAT11G1508' => 'cansat', 'CANSAT21G1562' => 'cansat', 'CANSAT56G0874' => 'cansat', 'CARHR004970' => 'chi', 'CARHR034960' => 'chi', 'CARHR100440' => 'chi', 'CARHR106640' => 'chi', 'CARHR112360' => 'chi', 'CARHR113450' => 'chi', 'CARHR113460' => 'chi', 'CARHR116670' => 'chi', 'CARHR120260' => 'chi', 'CARHR153700' => 'chi', 'CARHR153720' => 'chi', 'CARHR153730' => 'chi', 'CARHR153740' => 'chi', 'CARHR192380' => 'chi', 'CARHR216540' => 'chi', 'CARHR293640' => 'chi', 'CARHR293650' => 'chi', 'Carub.0001s0481' => 'cru', 'Carub.0003s2468' => 'cru', 'Carub.0003s3016' => 'cru', 'Carub.0004s0050' => 'cru', 'Carub.0004s0459' => 'cru', 'Carub.0004s0460' => 'cru', 'Carub.0005s0881' => 'cru', 'Carub.0006s1880' => 'cru', 'Carub.0008s1899' => 'cru', 'Ca_05997_v3' => 'car', 'Ca_05999_v3' => 'car', 'Ca_15161_v3' => 'car', 'Ca_20450_v3' => 'car', 'Ca_23901_v3' => 'car', 'CBR_g19871' => 'cbr', 'CBR_g28037' => 'cbr', 'Cc00_g05920' => 'ccan', 'Cc00_g19460' => 'ccan', 'Cc00_g19470' => 'ccan', 'Cc02_g05980' => 'ccan', 'Cc02_g17200' => 'ccan', 'Cc04_g15070' => 'ccan', 'Cc06_g20020' => 'ccan', 'Cc08_g01490' => 'ccan', 'Cc08_g06190' => 'ccan', 'CDE02G0292' => 'cde', 'CDE03G0261' => 'cde', 'CDE03G0361' => 'cde', 'CDE04G0926' => 'cde', 'CDE06G0228' => 'cde', 'CDE06G1623' => 'cde', 'CDE11G0668' => 'cde', 'Cfa001267' => 'cfa', 'Cfa012353' => 'cfa', 'Ciclev10023697m.g' => 'ccl', 'Ciclev10027795m.g' => 'ccl', 'Ciclev10030786m.g' => 'ccl', 'Ciclev10033966m.g' => 'ccl', 'CiPaw.01G301800' => 'cil', 'CiPaw.05G070200' => 'cil', 'CiPaw.06G132300' => 'cil', 'CiPaw.11G084700' => 'cil', 'CiPaw.12G056600' => 'cil', 'ClCG07G004630' => 'cla', 'ClCG09G012590' => 'cla', 'ClCG11G004110' => 'cla', 'COL.COLO4_15200' => 'col', 'COL.COLO4_25147' => 'col', 'COL.COLO4_25795' => 'col', 'COL.COLO4_25995' => 'col', 'COL.COLO4_25996' => 'col', 'COL.COLO4_25997' => 'col', 'Cpa.g.sc1026.2' => 'cpa', 'Cpa.g.sc19.122' => 'cpa', 'Cpa.g.sc19.123' => 'cpa', 'Cpa.g.sc76.2' => 'cpa', 'CsaV3_2G015070' => 'csa', 'CsaV3_3G049740' => 'csa', 'CsaV3_5G010570' => 'csa', 'CSS0009340' => 'camsi', 'CSS0025020' => 'camsi', 'CSS0026816' => 'camsi', 'CSS0026935' => 'camsi', 'CSS0033084' => 'camsi', 'CSS0048207' => 'camsi', 'DCAR_001556' => 'dca', 'DCAR_002749' => 'dca', 'DCAR_002750' => 'dca', 'DCAR_003655' => 'dca', 'DCAR_008315' => 'dca', 'DCAR_011852' => 'dca', 'DCAR_028963' => 'dca', 'DCAR_030464' => 'dca', 'Dinv23485' => 'din', 'Dinv28892' => 'din', 'Dinv42034' => 'din', 'Duzib106G0872' => 'dzi', 'Duzib114G0648' => 'dzi', 'Duzib132G0897' => 'dzi', 'Duzib177G0991' => 'dzi', 'Duzib248G0474' => 'dzi', 'ECA233G5578' => 'eca', 'ECA234G0277' => 'eca', 'ECA234G1026' => 'eca', 'ECA234G1905' => 'eca', 'ECA234G2709' => 'eca', 'ECA234G3058' => 'eca', 'ECA240G2411' => 'eca', 'ECA246G0377' => 'eca', 'EL10Ac2g04901' => 'bvu', 'EL10Ac5g12198' => 'bvu', 'EL10Ac5g12199' => 'bvu', 'EL10Ac5g12224' => 'bvu', 'EL10Ac5g12225' => 'bvu', 'EL10Ac7g17401' => 'bvu', 'EL10Ac9g21454' => 'bvu', 'EL10Ac9g21686' => 'bvu', 'Eucgr.E00332' => 'egr', 'Eucgr.E01664' => 'egr', 'Eucgr.G01701' => 'egr', 'Eucgr.J00168' => 'egr', 'FAN01G2255' => 'fan', 'FAN01G2656' => 'fan', 'FAN01G3160' => 'fan', 'FAN03G0676' => 'fan', 'FAN03G2016' => 'fan', 'FAN04G2213' => 'fan', 'FAN06G2284' => 'fan', 'FAN06G2800' => 'fan', 'FAN06G4690' => 'fan', 'FAN08G1245' => 'fan', 'FAN08G1631' => 'fan', 'FAN08G1755' => 'fan', 'FAN10G1759' => 'fan', 'FAN10G2086' => 'fan', 'FAN13G1989' => 'fan', 'FAN15G1535' => 'fan', 'FAN18G0116' => 'fan', 'FAN18G1620' => 'fan', 'FAN24G2419' => 'fan', 'FAN27G2965' => 'fan', 'FvH4_2g09760' => 'fve', 'FvH4_5g20730' => 'fve', 'FvH4_5g20740' => 'fve', 'FvH4_7g20540' => 'fve', 'FvH4_7g25190' => 'fve', 'Glyma.02G261800' => 'gma', 'Glyma.08G339800' => 'gma', 'Glyma.08G339900' => 'gma', 'Glyma.09G229400' => 'gma', 'Glyma.12G006900' => 'gma', 'Glyma.12G236100' => 'gma', 'Glyma.13G201800' => 'gma', 'Glyma.18G023900' => 'gma', 'Glyma.U027200' => 'gma', 'Gohir.A05G254100' => 'ghi', 'Gohir.A06G160900' => 'ghi', 'Gohir.A12G042200' => 'ghi', 'Gohir.A13G032200' => 'ghi', 'Gohir.A13G115600' => 'ghi', 'Gohir.D05G255700' => 'ghi', 'Gohir.D06G166900' => 'ghi', 'Gohir.D12G030100' => 'ghi', 'Gohir.D13G030500' => 'ghi', 'Gohir.D13G118700' => 'ghi', 'Gorai.008G031000' => 'gra', 'Gorai.009G267400' => 'gra', 'Gorai.010G194700' => 'gra', 'Gorai.013G034700' => 'gra', 'Gorai.013G133100' => 'gra', 'GSVIVG01013277001' => 'vvi', 'GSVIVG01023832001' => 'vvi', 'GSVIVG01024225001' => 'vvi', 'GSVIVG01024512001' => 'vvi', 'GSVIVG01032746001' => 'vvi', 'HanXRQChr03g0069371' => 'han', 'HanXRQChr03g0069421' => 'han', 'HanXRQChr06g0167171' => 'han', 'HanXRQChr08g0221881' => 'han', 'HanXRQChr12g0374341' => 'han', 'HanXRQChr14g0457431' => 'han', 'HanXRQChr14g0457451' => 'han', 'HanXRQChr14g0457461' => 'han', 'HanXRQChr14g0457471' => 'han', 'Haze_02322' => 'cav', 'Haze_02328' => 'cav', 'Haze_02329' => 'cav', 'Haze_08343' => 'cav', 'Haze_17278' => 'cav', 'Haze_17287' => 'cav', 'Hma1.2p1_0173F.1_g076420' => 'hma', 'Hma1.2p1_1013F.1_g247700' => 'hma', 'Hma1.2p1_1672F.1_g296860' => 'hma', 'Hma1.2p1_2802F.1_g328820' => 'hma', 'HPP92_003690' => 'vpl', 'HPP92_022391' => 'vpl', 'HPP92_022392' => 'vpl', 'Hund06249' => 'sun', 'Hund06399' => 'sun', 'Hund13529' => 'sun', 'Lalb_Chr01g0008001' => 'lal', 'Lalb_Chr03g0040861' => 'lal', 'Lalb_Chr09g0324051' => 'lal', 'Lalb_Chr10g0105301' => 'lal', 'Lalb_Chr16g0379301' => 'lal', 'Lalb_Chr17g0346921' => 'lal', 'Lalb_Chr19g0132261' => 'lal', 'Lalb_Chr19g0132271' => 'lal', 'Lj1A961T79' => 'lonja', 'Lj1g0007175' => 'lja', 'Lj1g0014164' => 'lja', 'Lj1g0015165' => 'lja', 'Lj1g0025431' => 'lja', 'Lj1g0026032' => 'lja', 'Lj2g0024507' => 'lja', 'Lj3g0000422' => 'lja', 'Lj4g0016792' => 'lja', 'Lj5A193T102' => 'lonja', 'Lj5g0003943' => 'lja', 'Lj5g0009315' => 'lja', 'Lj5g0015696' => 'lja', 'Lj6g0001238' => 'lja', 'Lj6g0006147' => 'lja', 'Lj6g0007539' => 'lja', 'Lj6g0012773' => 'lja', 'Lj6g0013892' => 'lja', 'Lj7A123T30' => 'lonja', 'Lj7A123T31' => 'lonja', 'Lj7P123T25' => 'lonja', 'Lj8C62G8' => 'lonja', 'Lj9A551T46' => 'lonja', 'LjContig00357g0008885' => 'lja', 'Lsat_1_v5_gn_3_15721' => 'lsa', 'Lsat_1_v5_gn_5_120421' => 'lsa', 'Lsat_1_v5_gn_5_182640' => 'lsa', 'Lsat_1_v5_gn_8_13121' => 'lsa', 'Lsat_1_v5_gn_8_13481' => 'lsa', 'Lsat_1_v5_gn_9_107821' => 'lsa', 'Manes.04G086500' => 'mes', 'Manes.10G007800' => 'mes', 'Manes.11G082500' => 'mes', 'Manes.15G171000' => 'mes', 'Mapoly0014s0121' => 'mpo', 'Mapoly0018s0003' => 'mpo', 'Mapoly0043s0033' => 'mpo', 'Mapoly0112s0028' => 'mpo', 'Mapoly0126s0027' => 'mpo', 'MBI02_g44626_MAGBIO' => 'mbi', 'MBI04_g41683_MAGBIO' => 'mbi', 'MBI04_g43202_MAGBIO' => 'mbi', 'MBI04_g44602_MAGBIO' => 'mbi', 'MBI04_g44603_MAGBIO' => 'mbi', 'MBI06_g27723_MAGBIO' => 'mbi', 'MBI06_g27724_MAGBIO' => 'mbi', 'MBI11_g32386_MAGBIO' => 'mbi', 'MBI15_g29426_MAGBIO' => 'mbi', 'MBI15_g42531_MAGBIO' => 'mbi', 'MD04G1053800' => 'mdo', 'MD05G1059900' => 'mdo', 'MD10G1068100' => 'mdo', 'MD17G1146600' => 'mdo', 'MD17G1146700' => 'mdo', 'Medtr1g081750' => 'mtr', 'Medtr2g084695' => 'mtr', 'Medtr2g437480' => 'mtr', 'Medtr3g071660' => 'mtr', 'Medtr3g071670' => 'mtr', 'Medtr3g071695' => 'mtr', 'Medtr3g071860' => 'mtr', 'Medtr3g084600' => 'mtr', 'Medtr4g088650' => 'mtr', 'Medtr5g083300' => 'mtr', 'Medtr7g026550' => 'mtr', 'Medtr7g026590' => 'mtr', 'Medtr7g026600' => 'mtr', 'Medtr7g026610' => 'mtr', 'Medtr7g026620' => 'mtr', 'Medtr7g026650' => 'mtr', 'Medtr7g029525' => 'mtr', 'Medtr7g050445' => 'mtr', 'Medtr7g450780' => 'mtr', 'Medtr7g450790' => 'mtr', 'Medtr7g450820' => 'mtr', 'Medtr7g450860' => 'mtr', 'Medtr8g037345' => 'mtr', 'Medtr8g038125' => 'mtr', 'MELO3C003343.2' => 'cme', 'MELO3C018395.2' => 'cme', 'MELO3C023332.2' => 'cme', 'Migut.B00205' => 'egut', 'Migut.B01246' => 'egut', 'Migut.B01247' => 'egut', 'Migut.B01495' => 'egut', 'Migut.F00630' => 'egut', 'Migut.H00017' => 'egut', 'MSTRG.16829' => 'ama', 'MSTRG.20502' => 'ama', 'MSTRG.3100' => 'ama', 'MSTRG.3101' => 'ama', 'MSTRG.8922' => 'ama', 'Nitab4.5_0000058g0030' => 'nta', 'Nitab4.5_0001817g0060' => 'nta', 'Nitab4.5_0001981g0020' => 'nta', 'Nitab4.5_0002559g0010' => 'nta', 'Nitab4.5_0003234g0070' => 'nta', 'Nitab4.5_0012853g0020' => 'nta', 'Nn1g00713' => 'nnu', 'Nn1g00714' => 'nnu', 'Nn1g05795' => 'nnu', 'Nn1g06958' => 'nnu', 'Nn1g09202' => 'nnu', 'Nn2g12181' => 'nnu', 'Nn2g14108' => 'nnu', 'Nn2g15117' => 'nnu', 'Nn5g29006' => 'nnu', 'Nn6g34612' => 'nnu', 'Oeu023910.1' => 'oeu', 'Oeu034021.1' => 'oeu', 'Oeu041616.1' => 'oeu', 'Oeu059735.1' => 'oeu', 'Oeu064142.1' => 'oeu', 'Oeu064143.1' => 'oeu', 'Oeu064144.1' => 'oeu', 'Os02g0650800' => 'osa', 'Os03g0165266' => 'osa', 'Os05g0392400' => 'osa', 'Os06g0255700' => 'osa', 'Os07g0434500' => 'osa', 'Os07g0692600' => 'osa', 'Os08g0243866' => 'osa', 'Os08g0289400' => 'osa', 'Peaxi162Scf00016g00426' => 'pax', 'Peaxi162Scf00284g00316' => 'pax', 'Peaxi162Scf00715g00116' => 'pax', 'Peaxi162Scf00715g00117' => 'pax', 'Peaxi162Scf00715g00118' => 'pax', 'PGR042G0187' => 'pgr', 'PGR042G0782' => 'pgr', 'PGR042G2995' => 'pgr', 'PGR042G3366' => 'pgr', 'PGR044G2605' => 'pgr', 'PGR083G1984' => 'pgr', 'PGSC0003DMG400001835' => 'stu', 'PGSC0003DMG400001851' => 'stu', 'PGSC0003DMG400001852' => 'stu', 'PGSC0003DMG400002443' => 'stu', 'PGSC0003DMG400006745' => 'stu', 'PGSC0003DMG400006746' => 'stu', 'PGSC0003DMG400006747' => 'stu', 'PGSC0003DMG400012796' => 'stu', 'PGSC0003DMG400014445' => 'stu', 'PGSC0003DMG400014992' => 'stu', 'PGSC0003DMG400017460' => 'stu', 'PGSC0003DMG400023950' => 'stu', 'PGSC0003DMG400030952' => 'stu', 'PGSC0003DMG400035372' => 'stu', 'PGSC0003DMG400035515' => 'stu', 'PGSC0003DMG400035564' => 'stu', 'PGSC0003DMG400038408' => 'stu', 'PGSC0003DMG400039340' => 'stu', 'PGSC0003DMG400040563' => 'stu', 'PGSC0003DMG400041064' => 'stu', 'PGSC0003DMG400045892' => 'stu', 'Phvul.001G246400' => 'pvu', 'Phvul.008G139600' => 'pvu', 'Phvul.008G139700' => 'pvu', 'Phvul.008G220500' => 'pvu', 'Phvul.011G210600' => 'pvu', 'Phvul.011G210800' => 'pvu', 'Potri.004G159000' => 'ptr', 'Potri.004G159100' => 'ptr', 'Potri.008G073500' => 'ptr', 'Potri.009G120700' => 'ptr', 'Potri.010G183766' => 'ptr', 'Potri.010G183799' => 'ptr', 'Potri.010G183832' => 'ptr', 'Potri.014G050200' => 'ptr', 'Pp3c1_36240' => 'ppa', 'Pp3c25_10710' => 'ppa', 'Pp3c2_3510' => 'ppa', 'Prupe.2G256800' => 'ppe', 'Prupe.5G049200' => 'ppe', 'Prupe.5G052400' => 'ppe', 'Prupe.8G089900' => 'ppe', 'Prupe.8G090000' => 'ppe', 'Psat2g030640' => 'psa', 'Psat3g156320' => 'psa', 'Psat3g156360' => 'psa', 'Psat3g159320' => 'psa', 'Psat4g169280' => 'psa', 'Psat4g193880' => 'psa', 'Psat5g144960' => 'psa', 'Psat7g126840' => 'psa', 'PSO063G2790' => 'pso', 'PSO170G2053' => 'pso', 'PSO210G6882' => 'pso', 'PSO349G0143' => 'pso', 'PSO349G0217' => 'pso', 'PSO384G3653' => 'pso', 'PSO700G0205' => 'pso', 'PSO731G0040' => 'pso', 'PSO765G0016' => 'pso', 'PSO782G2318' => 'pso', 'PSO782G4806' => 'pso', 'PSO832G1411' => 'pso', 'PSO832G3117' => 'pso', 'QL04p026517' => 'qlo', 'QL05p002583' => 'qlo', 'QL05p067774' => 'qlo', 'QL08p063892' => 'qlo', 'QL11p045293' => 'qlo', 'QL11p045305' => 'qlo', 'QL11p045326' => 'qlo', 'QL12p008403' => 'qlo', 'RcHm_v2.0_Chr1g0330461' => 'rch', 'RcHm_v2.0_Chr1g0330471' => 'rch', 'RcHm_v2.0_Chr1g0371111' => 'rch', 'RcHm_v2.0_Chr2g0120051' => 'rch', 'RcHm_v2.0_Chr2g0150021' => 'rch', 'RcHm_v2.0_Chr4g0415551' => 'rch', 'RcHm_v2.0_Chr6g0266061' => 'rch', 'RcHm_v2.0_Chr6g0266081' => 'rch', 'RcHm_v2.0_Chr7g0206511' => 'rch', 'RcHm_v2.0_Chr7g0206521' => 'rch', 'Rhsim03G0147600' => 'rsi', 'Rhsim04G0037100' => 'rsi', 'Rhsim04G0137400' => 'rsi', 'Rhsim05G0070700' => 'rsi', 'Rhsim07G0119700' => 'rsi', 'Rhsim09G0180400' => 'rsi', 'Rhsim11G0180800' => 'rsi', 'Sabra01G0119400' => 'sbr', 'Sabra04G0106400' => 'sbr', 'Sabra04G0106500' => 'sbr', 'Sabra08G0054700' => 'sbr', 'Sabra09G0093000' => 'sbr', 'Sabra10G0141000' => 'sbr', 'Sabra14G0035600' => 'sbr', 'Sabra14G0037700' => 'sbr', 'SalBow1G7998' => 'sbo', 'SalBow5G0521' => 'sbo', 'SalBow5G2797' => 'sbo', 'SalBow5G4444' => 'sbo', 'Sc11g0005360' => 'sci', 'Sc11g0005370' => 'sci', 'Sc14g0002030' => 'sci', 'Sc22g0001180' => 'sci', 'Sed0003616' => 'sed', 'Sed0009304' => 'sed', 'Sed0016433' => 'sed', 'Sed0017522' => 'sed', 'Sed0019490' => 'sed', 'SEGI_07300' => 'sgi', 'SEGI_23418' => 'sgi', 'SEGI_35559' => 'sgi', 'SGA_v2.0_scaffold10G05316' => 'sas', 'SGA_v2.0_scaffold135G34961' => 'sas', 'SGA_v2.0_scaffold190G40409' => 'sas', 'SGA_v2.0_scaffold34G13583' => 'sas', 'SGA_v2.0_scaffold437G51620' => 'sas', 'SGA_v2.0_scaffold58G20498' => 'sas', 'SGA_v2.0_scaffold618G53215' => 'sas', 'SHI05568' => 'shi', 'SHI07608' => 'shi', 'SHI15631' => 'shi', 'SHI28808' => 'shi', 'SMO115G0151' => 'smo', 'SMO351G0197' => 'smo', 'Solyc01g049740.1' => 'sly', 'Solyc01g058705.1' => 'sly', 'Solyc01g060460.2' => 'sly', 'Solyc01g068293.1' => 'sly', 'Solyc01g068297.1' => 'sly', 'Solyc01g068300.3' => 'sly', 'Solyc01g068305.1' => 'sly', 'Solyc01g068320.3' => 'sly', 'Solyc01g109970.3' => 'sly', 'Solyc02g033050.3' => 'sly', 'Solyc03g061630.1' => 'sly', 'Solyc03g061640.1' => 'sly', 'Solyc03g098175.1' => 'sly', 'Solyc04g054440.3' => 'sly', 'Solyc06g050510.3' => 'sly', 'Solyc08g022040.1' => 'sly', 'Solyc08g061340.1' => 'sly', 'Solyc08g061350.1' => 'sly', 'Solyc08g061370.1' => 'sly', 'Solyc08g061390.3' => 'sly', 'Solyc08g061400.1' => 'sly', 'Solyc08g061410.3' => 'sly', 'Solyc08g061420.1' => 'sly', 'Solyc08g061990.1' => 'sly', 'Solyc08g062000.3' => 'sly', 'Solyc08g062050.1' => 'sly', 'Solyc08g062060.1' => 'sly', 'Solyc08g062070.1' => 'sly', 'Solyc08g062080.1' => 'sly', 'Solyc08g074710.1' => 'sly', 'Solyc08g077570.3' => 'sly', 'Solyc08g077580.2' => 'sly', 'Solyc08g077590.1' => 'sly', 'Solyc08g077600.1' => 'sly', 'Solyc08g077610.3' => 'sly', 'Solyc08g077640.3' => 'sly', 'Solyc08g077650.1' => 'sly', 'Solyc08g077660.1' => 'sly', 'Solyc08g077670.3' => 'sly', 'Solyc08g077690.3' => 'sly', 'Sopen01g026600' => 'spe', 'Sopen01g030250' => 'spe', 'Sopen01g030260' => 'spe', 'Sopen01g030290' => 'spe', 'Sopen01g052160' => 'spe', 'Sopen04g024270' => 'spe', 'Sopen05g013050' => 'spe', 'Sopen05g014080' => 'spe', 'Sopen05g026630' => 'spe', 'Sopen05g026650' => 'spe', 'Sopen06g016030' => 'spe', 'Sopen08g016770' => 'spe', 'Sopen08g016780' => 'spe', 'Sopen08g017570' => 'spe', 'Sopen08g017580' => 'spe', 'Sopen08g017600' => 'spe', 'Sopen08g017620' => 'spe', 'Sopen08g026140' => 'spe', 'Sopen08g026150' => 'spe', 'Sopen08g026170' => 'spe', 'Sopen08g026180' => 'spe', 'Sopen08g026200' => 'spe', 'Sopen09g009510' => 'spe', 'Sopen10g028210' => 'spe', 'Sp1g04360' => 'spa', 'Sp3g22150' => 'spa', 'Sp3g29660' => 'spa', 'Sp4g15610' => 'spa', 'Sp6g24000' => 'spa', 'Sp7g16860' => 'spa', 'TAR381G0568' => 'tar', 'TAR381G1015' => 'tar', 'TAR381G1393' => 'tar', 'TAR625G0592' => 'tar', 'TAR629G1397' => 'tar', 'TAR636G0222' => 'tar', 'TAR636G0971' => 'tar', 'TAR636G1138' => 'tar', 'THA.LOC104799069' => 'tha', 'THA.LOC104807870' => 'tha', 'THA.LOC104808746' => 'tha', 'THA.LOC104811007' => 'tha', 'THA.LOC104819623' => 'tha', 'Thecc.02G079900' => 'tca', 'Thecc.08G178700' => 'tca', 'Thecc.10G009700' => 'tca', 'Thhalv10000722m.g' => 'esa', 'Thhalv10002375m.g' => 'esa', 'Thhalv10010079m.g' => 'esa', 'Thhalv10012460m.g' => 'esa', 'Thhalv10022532m.g' => 'esa', 'Thhalv10024231m.g' => 'esa', 'TPR.G10179' => 'tpr', 'TPR.G12762' => 'tpr', 'TPR.G12778' => 'tpr', 'TPR.G12892' => 'tpr', 'TPR.G15465' => 'tpr', 'TPR.G18784' => 'tpr', 'TPR.G1890' => 'tpr', 'TPR.G23932' => 'tpr', 'TPR.G27741' => 'tpr', 'TPR.G2807' => 'tpr', 'TPR.G28743' => 'tpr', 'TPR.G30915' => 'tpr', 'TPR.G30921' => 'tpr', 'TPR.G34419' => 'tpr', 'TPR.G35061' => 'tpr', 'TPR.G35164' => 'tpr', 'TPR.G38324' => 'tpr', 'TPR.G39034' => 'tpr', 'TPR.G39051' => 'tpr', 'TPR.G39061' => 'tpr', 'TPR.G39091' => 'tpr', 'TPR.G40678' => 'tpr', 'TPR.G8343' => 'tpr', 'TPR.G8432' => 'tpr', 'TWI73G1060' => 'twi', 'TWI75G0750' => 'twi', 'TWI79G0585' => 'twi', 'TWI79G1274' => 'twi', 'unitig_0.g1244' => 'ugi', 'unitig_0.g1245' => 'ugi', 'unitig_21.g20794' => 'ugi', 'unitig_21.g20795' => 'ugi', 'unitig_46.g18735' => 'ugi', 'vmacro02076' => 'vma', 'vmacro06943' => 'vma', 'vmacro09999' => 'vma', 'vmacro10000' => 'vma', 'vmacro14118' => 'vma', 'vmacro17455' => 'vma', 'vmacro17927' => 'vma', 'VMungo0647G1027' => 'vmu', 'VMungo0647G1332' => 'vmu', 'VMungo0647G2436' => 'vmu', 'VMungo1127G0892' => 'vmu', 'VMungo1127G1148' => 'vmu', 'VMungo1383G0423' => 'vmu', 'VMungo1383G1102' => 'vmu', 'Zm00001eb173050' => 'zma', 'Zm00001eb186260' => 'zma', 'Zm00001eb287330' => 'zma', 'Zm00001eb331510' => 'zma', 'Zm00001eb416780' => 'zma' ) $gf_id = 'HOM05D000725' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000725' ) $data_identifier = 'HOM05D000725' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 7, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 3, 'cqu' => (int) 14, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 7, 'can' => (int) 16, 'cansat' => (int) 4, 'chi' => (int) 17, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 8, 'din' => (int) 3, 'dzi' => (int) 5, 'eca' => (int) 8, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 17, 'lsa' => (int) 6, 'mes' => (int) 4, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 5, 'mtr' => (int) 24, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 6, 'nnu' => (int) 10, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 21, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 40, 'spe' => (int) 24, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 24, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416780' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1